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42 Commits

Author SHA1 Message Date
RTB
2e95d35283 modified parse_synonyms and new_synonym to include a Selector for future edits 2014-04-17 21:30:53 +02:00
Rob tB
9a78e186bc chemspider parser now grabs data from ExtendedCompoundInfo() of chemspider API (no units) 2014-04-16 16:22:47 +02:00
Rob tB
caf7d3df4e fixed ExtendedCompoundInfo url to have csid parameter instead of query 2014-04-16 15:27:10 +02:00
Rob tB
2d314aee6a created stub to parse ExtendedCompoundInfo from ChemSpider MassSpec API 2014-04-16 15:21:33 +02:00
Rob tB
7fc980befe chemspider should now only generate new Requests for wikipedia links from 'expert confirmed' synonyms 2014-04-16 15:02:37 +02:00
Rob tB
87282fc572 new properties in parse_properties now use dictionary syntax 2014-04-16 14:26:27 +02:00
Rob tB
93a6f098a9 log messages are now DEBUG instead of WARNING 2014-04-16 13:28:59 +02:00
Rob tB
c1b5f810cb unused Result properties are now empty string instead of None 2014-04-16 11:53:59 +02:00
Jip J. Dekker
9dcb150356 Merge branch 'develop' into feature/chemspider-parser 2014-04-16 10:24:52 +02:00
Jip J. Dekker
61ca2520e3 Added feed export functionality 2014-04-15 19:40:54 +02:00
RTB
8e46762a9e fix: if no experimental data, return predicted acd/labs data instead of None 2014-04-15 18:56:38 +02:00
Jip J. Dekker
ffb3861034 Search for single compound, filename should be lowercase 2014-04-15 18:49:30 +02:00
RTB
ff0eb309da ChemSpider parser now handles the Predicted - ACD/Labs tab for scraping properties 2014-04-14 17:27:02 +02:00
RTB
2ae3ac9c51 added parse_properties to scrape the Experimental Physico-chemical Properties table if it exists 2014-04-14 13:09:14 +02:00
RTB
31a63829f8 chemspider parser now makes new synonym requests with the scraped synonyms 2014-04-14 01:23:15 +02:00
RTB
e95df8eaa3 ignore_list now contains the intended names instead of Result objects 2014-04-14 01:20:24 +02:00
RTB
564dbc3292 added ignore list to new_compound_request for synonyms found by chemspider parser 2014-04-14 00:33:25 +02:00
RTB
b1b969a16c corrected usage of __spider variable 2014-04-14 00:28:47 +02:00
RTB
0ad98905e3 added scraping for wikipedia links in synonym tab 2014-04-13 23:35:25 +02:00
RTB
5565c28a1e moved parsing of synonyms to 'parse_synonyms' function 2014-04-13 23:14:23 +02:00
RTB
859a18c61a added parsing of synonyms 2014-04-12 22:27:28 +02:00
RTB
22fa67735d added parse_searchrequest function 2014-04-12 19:41:36 +02:00
RTB
246463b450 simplified debug output, WARNING label should be temporary 2014-04-12 19:19:56 +02:00
RTB
423cb90a6a Merge branch 'develop' into feature/chemspider-parser 2014-04-12 19:13:02 +02:00
RTB
0e3ef9a792 hardcoded ChemSpider API token into ChemSpider.py 2014-04-08 16:14:47 +02:00
RTB
a4dc8c8711 corrected Chemspider parser to be a subclass of Parser 2014-04-08 13:10:02 +02:00
RTB
0da286c907 created basic structure of ChemSpider search parser 2014-04-08 12:08:45 +02:00
Jip J. Dekker
da17a149c0 Spider is now able to handle none-request from parsers while handling new
compounds
2014-04-08 11:42:43 +02:00
Jip J. Dekker
f6981057df Changed everything to spaces 2014-04-02 14:20:05 +02:00
Jip J. Dekker
7bc160f676 The spider is now able to start using the synonym generator 2014-04-01 21:38:11 +02:00
Jip J. Dekker
683f8c09d4 Quick fix, python errors 2014-04-01 21:12:54 +02:00
Jip J. Dekker
f93dc2d160 Added an structure to get requests for all websites for a new synonym 2014-04-01 21:07:36 +02:00
Jip J. Dekker
e39ed3b681 Added a way for parsers to access the spider. 2014-04-01 20:56:32 +02:00
Jip J. Dekker
4d9e5307bf Written an loader for all parsers in the parser directory. 2014-03-31 00:48:45 +02:00
Jip J. Dekker
0cc1b23353 Added the functionality to add parsers and automatically use them. 2014-03-30 23:37:42 +02:00
Jip J. Dekker
14c27458fc Fixed an import error 2014-03-30 23:07:28 +02:00
Jip J. Dekker
32cedecf2e Added an basic parser class to extend, next step implementing the global function 2014-03-28 14:44:17 +01:00
Jip J. Dekker
87d1041517 Made all Python files PEP-8 Compatible 2014-03-28 14:11:36 +01:00
Jip J. Dekker
5b17627504 The parsers however could use their own folder 2014-03-27 13:23:03 +01:00
Jip J. Dekker
8e9314e753 One spider should have it's own folder 2014-03-27 13:18:55 +01:00
Jip J. Dekker
8175e02f6c New Structure, splitting on parsers instead of Spiders 2014-03-27 13:08:46 +01:00
Jip J. Dekker
b1840d3a65 Another name change to accommodate an executable script 2014-03-18 17:44:32 +01:00