Archived
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47 Commits

Author SHA1 Message Date
RTB
63fb9f4733 added comment to parse_searchrequest and added optional todo for extract()[0] usage 2014-04-18 17:33:00 +02:00
RTB
3c5dbc44dc added comments for chemspider parse_extendedinfo 2014-04-18 17:14:19 +02:00
RTB
2ac6d1711d added comments for chemspider new_synonym 2014-04-18 17:11:04 +02:00
RTB
3862bfb7d8 added comments for ChemSpider class, parse_properties, and parse_synonyms 2014-04-18 16:54:30 +02:00
RTB
f18f23dfc6 chemspider new_compound_request is now PEP-8 compliant 2014-04-18 16:20:47 +02:00
RTB
074fbdf9e2 changed source for properties by parse_extendedinfo to 'ChemSpider ExtendedCompoundInfo' 2014-04-18 16:13:44 +02:00
RTB
fa22356cb2 chemspider parse_extendedinfo is now PEP-8 compliant 2014-04-18 16:12:07 +02:00
RTB
479182d77e chemspider new_synonym is now PEP-8 compliant 2014-04-18 16:07:06 +02:00
RTB
319e028717 chemspider parse_properties a bit more PEP-8 compliant 2014-04-18 15:55:04 +02:00
RTB
9aae8d2d07 chemspider parse_properties is now PEP-8 compliant, hopefully 2014-04-18 15:38:07 +02:00
RTB
c1c7cfc117 edited global strings to be consistent (PEP-8) 2014-04-18 15:12:22 +02:00
RTB
f2cacb79eb properties from Predicted - ACD/Labs tab now include conditions from value variable 2014-04-18 15:03:06 +02:00
RTB
3bf8dccf18 properties from Predicted - ACD/Labs tab now include conditions from attribute variable 2014-04-18 14:59:56 +02:00
RTB
cd8a64816f removed colon at end of attributes in Experimental and Predicted ACD/labs tabs 2014-04-18 14:10:53 +02:00
RTB
22c765b6e5 simplified setting of Results for Predicted ACD/Labs tab 2014-04-18 14:08:48 +02:00
RTB
75d248e6cf changed for loop in parse_properties to use zip instead of enumerate 2014-04-18 13:45:32 +02:00
RTB
bf4a5bb41f added scraping of synonyms labeled as 'synonym_cn' 2014-04-18 13:36:33 +02:00
RTB
a4a21f2578 changed default reliability from empty string to Unknown as per UML design 2014-04-18 13:19:05 +02:00
RTB
9389af99ba removed manual Requests for wikipedia URLs as wikipedia parser handles those through synonyms 2014-04-18 13:17:24 +02:00
RTB
ae21fa7c67 chemspider now scrapes for reference data on synonyms 2014-04-18 13:16:22 +02:00
RTB
119d48890d fixed conditional for emitting synonyms, it compiles again 2014-04-18 12:14:54 +02:00
RTB
04751b6670 chemspider parser now only emits synonyms labeled as 'English' 2014-04-17 22:47:43 +02:00
RTB
ce5eeb56a6 added scraping of synonym language 2014-04-17 22:37:37 +02:00
RTB
4f2c046c9c rewrote parse_synonyms and new_synonym to use an internal dictionary structure 2014-04-17 22:06:45 +02:00
RTB
2e95d35283 modified parse_synonyms and new_synonym to include a Selector for future edits 2014-04-17 21:30:53 +02:00
Rob tB
9a78e186bc chemspider parser now grabs data from ExtendedCompoundInfo() of chemspider API (no units) 2014-04-16 16:22:47 +02:00
Rob tB
caf7d3df4e fixed ExtendedCompoundInfo url to have csid parameter instead of query 2014-04-16 15:27:10 +02:00
Rob tB
2d314aee6a created stub to parse ExtendedCompoundInfo from ChemSpider MassSpec API 2014-04-16 15:21:33 +02:00
Rob tB
7fc980befe chemspider should now only generate new Requests for wikipedia links from 'expert confirmed' synonyms 2014-04-16 15:02:37 +02:00
Rob tB
87282fc572 new properties in parse_properties now use dictionary syntax 2014-04-16 14:26:27 +02:00
Rob tB
93a6f098a9 log messages are now DEBUG instead of WARNING 2014-04-16 13:28:59 +02:00
Rob tB
c1b5f810cb unused Result properties are now empty string instead of None 2014-04-16 11:53:59 +02:00
RTB
8e46762a9e fix: if no experimental data, return predicted acd/labs data instead of None 2014-04-15 18:56:38 +02:00
RTB
ff0eb309da ChemSpider parser now handles the Predicted - ACD/Labs tab for scraping properties 2014-04-14 17:27:02 +02:00
RTB
2ae3ac9c51 added parse_properties to scrape the Experimental Physico-chemical Properties table if it exists 2014-04-14 13:09:14 +02:00
RTB
31a63829f8 chemspider parser now makes new synonym requests with the scraped synonyms 2014-04-14 01:23:15 +02:00
RTB
e95df8eaa3 ignore_list now contains the intended names instead of Result objects 2014-04-14 01:20:24 +02:00
RTB
564dbc3292 added ignore list to new_compound_request for synonyms found by chemspider parser 2014-04-14 00:33:25 +02:00
RTB
b1b969a16c corrected usage of __spider variable 2014-04-14 00:28:47 +02:00
RTB
0ad98905e3 added scraping for wikipedia links in synonym tab 2014-04-13 23:35:25 +02:00
RTB
5565c28a1e moved parsing of synonyms to 'parse_synonyms' function 2014-04-13 23:14:23 +02:00
RTB
859a18c61a added parsing of synonyms 2014-04-12 22:27:28 +02:00
RTB
22fa67735d added parse_searchrequest function 2014-04-12 19:41:36 +02:00
RTB
246463b450 simplified debug output, WARNING label should be temporary 2014-04-12 19:19:56 +02:00
RTB
0e3ef9a792 hardcoded ChemSpider API token into ChemSpider.py 2014-04-08 16:14:47 +02:00
RTB
a4dc8c8711 corrected Chemspider parser to be a subclass of Parser 2014-04-08 13:10:02 +02:00
RTB
0da286c907 created basic structure of ChemSpider search parser 2014-04-08 12:08:45 +02:00