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118 Commits

Author SHA1 Message Date
Jip J. Dekker
afaa0d903f Merge pull request #3 from Recondor/feature/chemspider-parser-fixes
Feature/chemspider-parser-fixes
2014-05-09 23:06:43 +02:00
Jip J. Dekker
f193aac24a Fixed Duplicate Pipeline + rename 2014-05-08 15:45:42 +02:00
Jip J. Dekker
2e654255c5 Added documentation to the pipeline. 2014-05-08 15:35:18 +02:00
Jip J. Dekker
2fcec009bb Added an Pipeline to deal with attribute selection 2014-05-08 15:20:48 +02:00
RTB
ca0a22ae7b Added test for empty values on properties in ChemSpider ExtendedCompoundInfo API 2014-05-01 12:14:52 +02:00
RTB
73753a6294 chemspider source now handles vague search requests 2014-05-01 12:04:44 +02:00
RTB
971552110a Added test for empty values on properties in ACD/Labs tab 2014-04-29 16:30:09 +02:00
Jip J. Dekker
d523d4edcd Spelling errors 2014-04-23 22:58:04 +02:00
Jip J. Dekker
c5bffffeda Delayed refractor from developing branch 2014-04-23 22:55:28 +02:00
Jip J. Dekker
964e0b8ade Merge branch 'develop' into feature/Wikipedia 2014-04-23 22:53:28 +02:00
Nout van Deijck
9cbdf57238 fixed comments 2014-04-23 16:24:27 +02:00
Nout van Deijck
150fc5bea7 added comments 2014-04-23 16:17:23 +02:00
Nout van Deijck
9cefd336e0 Cleaning up code and added log messages 2014-04-23 16:02:37 +02:00
Jip J. Dekker
90f03734a6 Refractored classname 2014-04-23 15:57:10 +02:00
Jip J. Dekker
e18e4b4b26 Resolved all references to the old folder 2014-04-23 15:55:38 +02:00
Jip J. Dekker
1e24453a11 Renamed filename of basic source class 2014-04-23 15:51:03 +02:00
Nout van Deijck
507006889b Fixed problem with strange urls, now adds all external identifiers as requests 2014-04-23 15:49:23 +02:00
Jip J. Dekker
662ee8f490 Renamed folder 2014-04-23 15:49:03 +02:00
Bas Vb
62475d965d Cleaning up code 2014-04-23 15:24:57 +02:00
Nout van Deijck
3e1b33164e Some comments and trying different for loop for adding requests 2014-04-23 13:48:44 +02:00
Nout van Deijck
1ced65e2b6 Parser now adds extra requests for every identifier to an external source that is in the Wikipedia chembox 2014-04-23 13:18:50 +02:00
Nout van Deijck
b5c83125f7 Added extra request for chemspider link retreived from Wikipedia 2014-04-23 12:27:53 +02:00
Bas Vb
f926f86d7d Small fix because the cleaned up items were not send back 2014-04-23 12:14:20 +02:00
Nout van Deijck
6dd03c293a Added check for already visited redirects of compounds 2014-04-23 12:08:33 +02:00
Bas Vb
cb299df96f Added log statements 2014-04-23 11:46:43 +02:00
Bas Vb
fd5faf22e4 Added empty reliability and condition to prevent errors for now 2014-04-23 11:12:58 +02:00
Bas Vb
1c518af5a6 Remove per attribute getfunctions 2014-04-23 11:06:59 +02:00
Jip J. Dekker
595af7aa32 PEP-8 and fixed a bug in set_spider 2014-04-22 19:03:29 +02:00
Jip J. Dekker
ba7bed0250 Disabled name mangling for the spider reference in the parsers 2014-04-22 18:55:14 +02:00
Jip J. Dekker
648b23e466 PEP-8 standards for a lot of things 2014-04-22 18:54:10 +02:00
Jip J. Dekker
0da2d74e2c PEP-8 indentation for multi-line statements 2014-04-22 18:46:49 +02:00
Jip J. Dekker
7a1e99605b Uniform TODO tags, indentation faults. 2014-04-22 18:40:14 +02:00
Bas Vb
b0146cdce8 Added regular expressions to clean up temperature data 2014-04-22 09:46:19 +02:00
RTB
63fb9f4733 added comment to parse_searchrequest and added optional todo for extract()[0] usage 2014-04-18 17:33:00 +02:00
RTB
3c5dbc44dc added comments for chemspider parse_extendedinfo 2014-04-18 17:14:19 +02:00
RTB
2ac6d1711d added comments for chemspider new_synonym 2014-04-18 17:11:04 +02:00
RTB
3862bfb7d8 added comments for ChemSpider class, parse_properties, and parse_synonyms 2014-04-18 16:54:30 +02:00
RTB
f18f23dfc6 chemspider new_compound_request is now PEP-8 compliant 2014-04-18 16:20:47 +02:00
RTB
074fbdf9e2 changed source for properties by parse_extendedinfo to 'ChemSpider ExtendedCompoundInfo' 2014-04-18 16:13:44 +02:00
RTB
fa22356cb2 chemspider parse_extendedinfo is now PEP-8 compliant 2014-04-18 16:12:07 +02:00
RTB
479182d77e chemspider new_synonym is now PEP-8 compliant 2014-04-18 16:07:06 +02:00
RTB
319e028717 chemspider parse_properties a bit more PEP-8 compliant 2014-04-18 15:55:04 +02:00
RTB
9aae8d2d07 chemspider parse_properties is now PEP-8 compliant, hopefully 2014-04-18 15:38:07 +02:00
RTB
c1c7cfc117 edited global strings to be consistent (PEP-8) 2014-04-18 15:12:22 +02:00
RTB
f2cacb79eb properties from Predicted - ACD/Labs tab now include conditions from value variable 2014-04-18 15:03:06 +02:00
RTB
3bf8dccf18 properties from Predicted - ACD/Labs tab now include conditions from attribute variable 2014-04-18 14:59:56 +02:00
RTB
cd8a64816f removed colon at end of attributes in Experimental and Predicted ACD/labs tabs 2014-04-18 14:10:53 +02:00
RTB
22c765b6e5 simplified setting of Results for Predicted ACD/Labs tab 2014-04-18 14:08:48 +02:00
RTB
75d248e6cf changed for loop in parse_properties to use zip instead of enumerate 2014-04-18 13:45:32 +02:00
RTB
bf4a5bb41f added scraping of synonyms labeled as 'synonym_cn' 2014-04-18 13:36:33 +02:00