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89 Commits

Author SHA1 Message Date
Rob tB
93a6f098a9 log messages are now DEBUG instead of WARNING 2014-04-16 13:28:59 +02:00
Rob tB
c1b5f810cb unused Result properties are now empty string instead of None 2014-04-16 11:53:59 +02:00
Jip J. Dekker
9dcb150356 Merge branch 'develop' into feature/chemspider-parser 2014-04-16 10:24:52 +02:00
Jip J. Dekker
6799a1a956 Merge branch 'release/v0.1.0' into develop 1-searchable 2014-04-15 19:49:07 +02:00
Jip J. Dekker
972e5da0d2 Removed debug code and typos. 2014-04-15 19:48:27 +02:00
Jip J. Dekker
d770f79a7a Bumped version number 2014-04-15 19:46:10 +02:00
Jip J. Dekker
878d8e5efb Merge branch 'feature/CLI' into develop 2014-04-15 19:44:41 +02:00
Jip J. Dekker
61ca2520e3 Added feed export functionality 2014-04-15 19:40:54 +02:00
Jip J. Dekker
e65d3a6898 Added the options for the Feed exports 2014-04-15 18:57:51 +02:00
RTB
8e46762a9e fix: if no experimental data, return predicted acd/labs data instead of None 2014-04-15 18:56:38 +02:00
Jip J. Dekker
ffb3861034 Search for single compound, filename should be lowercase 2014-04-15 18:49:30 +02:00
Jip J. Dekker
a4dd6e1835 Made logging work 2014-04-14 21:31:20 +02:00
Jip J. Dekker
2ad33080c6 First setup of the CLI, decided on a structure 2014-04-14 20:45:07 +02:00
Jip J. Dekker
ee01e697d3 Added Docopt as an CLI framework 2014-04-14 20:21:41 +02:00
RTB
ff0eb309da ChemSpider parser now handles the Predicted - ACD/Labs tab for scraping properties 2014-04-14 17:27:02 +02:00
RTB
2ae3ac9c51 added parse_properties to scrape the Experimental Physico-chemical Properties table if it exists 2014-04-14 13:09:14 +02:00
RTB
31a63829f8 chemspider parser now makes new synonym requests with the scraped synonyms 2014-04-14 01:23:15 +02:00
RTB
e95df8eaa3 ignore_list now contains the intended names instead of Result objects 2014-04-14 01:20:24 +02:00
RTB
564dbc3292 added ignore list to new_compound_request for synonyms found by chemspider parser 2014-04-14 00:33:25 +02:00
RTB
b1b969a16c corrected usage of __spider variable 2014-04-14 00:28:47 +02:00
RTB
0ad98905e3 added scraping for wikipedia links in synonym tab 2014-04-13 23:35:25 +02:00
RTB
5565c28a1e moved parsing of synonyms to 'parse_synonyms' function 2014-04-13 23:14:23 +02:00
RTB
859a18c61a added parsing of synonyms 2014-04-12 22:27:28 +02:00
RTB
22fa67735d added parse_searchrequest function 2014-04-12 19:41:36 +02:00
RTB
246463b450 simplified debug output, WARNING label should be temporary 2014-04-12 19:19:56 +02:00
RTB
423cb90a6a Merge branch 'develop' into feature/chemspider-parser 2014-04-12 19:13:02 +02:00
RTB
0e3ef9a792 hardcoded ChemSpider API token into ChemSpider.py 2014-04-08 16:14:47 +02:00
RTB
a4dc8c8711 corrected Chemspider parser to be a subclass of Parser 2014-04-08 13:10:02 +02:00
RTB
0da286c907 created basic structure of ChemSpider search parser 2014-04-08 12:08:45 +02:00
Jip J. Dekker
debbc5e62a Merge branch 'hotfix/none-requests' into develop 2014-04-08 11:44:42 +02:00
Jip J. Dekker
622dd4ad00 Small fix to ensure unique classes and load all parsers 2014-04-08 11:43:32 +02:00
Jip J. Dekker
da17a149c0 Spider is now able to handle none-request from parsers while handling new
compounds
2014-04-08 11:42:43 +02:00
Jip J. Dekker
3a074467e6 Merge branch 'hotfix/No_TABs' into develop 2014-04-02 14:22:13 +02:00
Jip J. Dekker
9805bb5adb Merge branch 'hotfix/No_TABs' 2014-04-02 14:21:34 +02:00
Jip J. Dekker
f6981057df Changed everything to spaces 2014-04-02 14:20:05 +02:00
Jip J. Dekker
595f0253e2 Merge branch 'release/v0.0.1' into develop 2014-04-01 21:44:31 +02:00
Jip J. Dekker
254e8db3aa Merge branch 'release/v0.0.1' v0.0.1 2014-04-01 21:44:08 +02:00
Jip J. Dekker
c9e09f8ab9 Added an version message 2014-04-01 21:42:54 +02:00
Jip J. Dekker
2e8017c590 Merge branch 'feature/parsing-scheme' into develop 2014-04-01 21:40:26 +02:00
Jip J. Dekker
7bc160f676 The spider is now able to start using the synonym generator 2014-04-01 21:38:11 +02:00
Jip J. Dekker
cd421cc2fb Replaced literal for testing with a variable fix. 2014-04-01 21:24:04 +02:00
Jip J. Dekker
0bf2d102c6 Fixed parser importation, so it doesn't import imported classes. 2014-04-01 21:21:30 +02:00
Jip J. Dekker
683f8c09d4 Quick fix, python errors 2014-04-01 21:12:54 +02:00
Jip J. Dekker
f93dc2d160 Added an structure to get requests for all websites for a new synonym 2014-04-01 21:07:36 +02:00
Jip J. Dekker
e39ed3b681 Added a way for parsers to access the spider. 2014-04-01 20:56:32 +02:00
Jip J. Dekker
4d9e5307bf Written an loader for all parsers in the parser directory. 2014-03-31 00:48:45 +02:00
Jip J. Dekker
0cc1b23353 Added the functionality to add parsers and automatically use them. 2014-03-30 23:37:42 +02:00
Jip J. Dekker
6e2df64fe4 Merge branch 'hotfix/spider-import-error' into develop 2014-03-30 23:08:14 +02:00
Jip J. Dekker
a6d3d4a716 Merge branch 'hotfix/spider-import-error' spider-import-error 2014-03-30 23:07:52 +02:00
Jip J. Dekker
14c27458fc Fixed an import error 2014-03-30 23:07:28 +02:00